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Ticket Resolution Summary Owner Reporter
#41 fixed Prior Metabs tab needs a scrolled panel flip
Description

The prior metabs tab lists metabolites, and as we've seen elsewhere a long list of metabs will overflow the available screen real estate as in the attached screenshot.

The solution is a scrolled panel.

#40 fixed HLSVD GUI doesn't account for algorithmic limitation for # of data points flip
Description

The HLSVD implementation uses a mixed-radix FFT which limits it to certain values for # of data points. Other values cause the algorithm to fail (return no data). No Python version of Analysis to date has restricted # of data points to numbers on this whitelist. We need to fix that.

IDL Vespa knew about this limitation of HLSVD and fudged users' input (silently) to ensure the # of data points was valid. In the Fortran code, the numbers are read from a file that we don't have anymore. IDL Vespa hardcoded the list and the numbers below were taken from IDL Vespa's code.

The numbers in the list only go up to 1024 even though the algorithm purportedly allows 2048. This is probably because the algorithm isn't stable up to 2048 points as described in ticket #36. In fact, I found the bug described in ticket #36 because I was iterating through values 1025-2048 to find which ones were accepted by the mixed-radix FFT.

Anyway, here's the list.

  1,
  2,   3,   4,   5,   6,   7,  8,    9,  
 10,  11,  12,  13,  14,  15,  16,  17,  
 18,  19,  20,  21,  22,  23,  24,  25,  
 26,  27,  28,  30,  32,  33,  34,  35,  
 36,  38,  39,  40,  42,  44,  45,  46,  
 48,  49,  50,  51,  52,  54,  55,  56,  
 57,  60,  63,  64,  65,  66,  68,  69,   
 70,  72,  75,  76,  77,  78,  80,  81,  
 84,  85,  88,  90,  91,  92,  95,  96,     
 98,  99, 100, 102, 104, 105, 108, 110,   
112, 114, 115, 117, 119, 120, 121, 125, 
126, 128, 130, 132, 133, 135, 136, 138, 
140, 143, 144, 146, 147, 150, 152, 153, 
154, 156, 160, 161, 162, 165, 168, 169, 
170, 171, 175, 176, 180, 182, 184, 187, 
189, 190, 192, 195, 196, 198, 200, 204, 
207, 208, 209, 210, 216, 220, 221, 224, 
225, 228, 230, 231, 234, 238, 240, 242, 
243, 245, 247, 250, 252, 253, 255, 256, 
260, 264, 266, 270, 272, 273, 275, 276, 
280, 285, 286, 288, 289, 294, 297, 299, 
300, 304, 306, 308, 312, 315, 320, 322, 
323, 324, 325, 330, 336, 338, 340, 342, 
343, 345, 350, 351, 352, 357, 360, 361, 
363, 364, 368, 374, 375, 378, 380, 384, 
385, 390, 391, 392, 396, 399, 400, 405, 
408, 414, 416, 418, 420, 425, 429, 432, 
437, 440, 441, 442, 448, 450, 455, 456, 
459, 460, 462, 468, 475, 476, 480, 483, 
484, 486, 490, 494, 495, 500, 504, 506, 
507, 510, 512, 513, 520, 525, 528, 529, 
532, 539, 540, 544, 550, 552, 560, 567, 
572, 575, 576, 578, 585, 588, 594, 600, 
605, 608, 612, 616, 621, 624, 625, 630, 
637, 640, 644, 648, 650, 660, 672, 675, 
676, 680, 684, 686, 693, 700, 702, 704, 
720, 722, 726, 728, 729, 735, 736, 748, 
750, 756, 760, 765, 768, 780, 784, 792, 
800, 810, 816, 819, 825, 828, 832, 833, 
836, 840, 845, 847, 850, 855, 864, 867, 
875, 880, 882, 884, 891, 896, 900, 912, 
918, 920, 924, 931, 936, 945, 950, 952, 
960, 968, 972, 975, 980, 988, 990, 1000,
1001, 1008, 1012, 1014, 1020, 1024 
#38 fixed Non-default zerofill specified in presets not applied correctly bsoher flip
Description
  1. import press_cp0.rsd
  2. Load the attached presets file (which has zerofill = 8)
Traceback (most recent call last):
 File "./main.py", line 397, in on_load_preset
   dataset.load_preset(presets[0], voxel=tab.voxel)
 File "/Users/me/w/duke/src/vespa/analysis/src/mrs_dataset.py", line 703, in load_preset
   block.chain.run(voxel=voxel, entry=entry)
 File "/Users/me/w/duke/src/vespa/analysis/src/chain_spectral.py", line 214, in run
   self.block.data[voxel[2],voxel[1],voxel[0],:] = self.freq.copy()
ValueError: operands could not be broadcast together with shapes (4096) (32768)
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